This file is automatically generated. It contains the descriptions of each uploaded file as provided by the user.

  • anncolvar.zip: Input files (input structure, topology, Plumed input) for simulations used to demonstrate functionality of anncolvar (https://github.com/spiwokv/anncolvar). Input files for metadynamics simulation of cyclooctane derivative in vacuum with three Isomap CVs, metadynamics (mtd), parallel tempering (ptmd) and parallel tempering metadynamics (ptmtd) of Trp-cage in water with solvent-accessible surface area and alpha-RMSD CVs are provided. Tested on OpenMPI4.0.0, Gromacs 2018.5 and Plumed2.5.0. Scripts provided.
  • README.txt: README.txt file with descriptions.