├── Generate_labeled_dataframe_including_ASEstructures.ipynb:
Generate the data frame for labeled structures (based on vdW-DF2)
├──MultipleFeaturizer-SHAP.ipynb:
This is the main notebook that generates the features that are finally used, and also this notebook train the proposed random forest model.
├──run_LowDimFinder_and_predict_using_ML_model.ipynb:
This JN performs the geometrical analysis using LowDimFinder and then uses the trained ML to make a prediction.
├──model:
This folder contains the pre-trained ML models.
├──lowdimfinder:
This folder contains the code used for geometrical analysis.
├── data
This folder contains all the data and structures used for training the ML model.
├── false-negatives structures
This folder contains all the false-negative structures predicted with ML.
├── sample-structures
This folder contains structures that are put as examples in the online tool.
├── structures_3D_xsf
This folder contains all the 3d structures in xsf format.