plumed2_development.zip
The previewer is not showing all the files.
__MACOSX
._plumed2_development
212 Bytes
plumed2_development
._.DS_Store
120 Bytes
._.astyle.options
212 Bytes
._.codecov.yml
212 Bytes
._.github
212 Bytes
._.gitignore
212 Bytes
._.lgtm.yml
212 Bytes
._.travis
212 Bytes
._.travis.yml
212 Bytes
._CHANGES
212 Bytes
._COPYING.LESSER
212 Bytes
._Makefile
212 Bytes
._Makefile.conf.in
212 Bytes
._PEOPLE
212 Bytes
._README.md
212 Bytes
._VERSION
212 Bytes
._astyle
212 Bytes
._conda
212 Bytes
._configure
212 Bytes
._configure.ac
212 Bytes
._developer-doc
212 Bytes
._docker
212 Bytes
._macports
212 Bytes
._patches
212 Bytes
._python
212 Bytes
._regtest
212 Bytes
._release.sh
212 Bytes
._scripts
212 Bytes
._sourceme.sh.in
212 Bytes
._src
212 Bytes
._stamp-h.in
212 Bytes
._test
212 Bytes
._user-doc
212 Bytes
._vim
212 Bytes
.github
._CONTRIBUTING.md
212 Bytes
._PULL_REQUEST_TEMPLATE.md
212 Bytes
._workflows
212 Bytes
.travis
._check.log
212 Bytes
._install.arrayfire
212 Bytes
._install.boost
212 Bytes
._install.ccache
212 Bytes
._install.cppcheck
212 Bytes
._install.doxygen
212 Bytes
._install.gawk
212 Bytes
._install.lcov
212 Bytes
._install.xdrfile
212 Bytes
._push
212 Bytes
CHANGES
._v2.0.md
212 Bytes
._v2.1.md
212 Bytes
._v2.2.md
212 Bytes
._v2.3.md
212 Bytes
._v2.4.md
212 Bytes
._v2.5.md
212 Bytes
._v2.6.md
212 Bytes
._v2.7.md
212 Bytes
astyle
._.gitignore
212 Bytes
._CMakeLists.txt
212 Bytes
._LICENSE.md
212 Bytes
._Makefile
212 Bytes
._README.md
212 Bytes
._build
212 Bytes
._doc
212 Bytes
._file
212 Bytes
._src
212 Bytes
conda
._.DS_Store
120 Bytes
._Makefile
212 Bytes
._plumed
212 Bytes
._py-plumed
212 Bytes
._run-conda-build.sh
212 Bytes
._run-conda-upload.sh
212 Bytes
plumed
._build.sh
212 Bytes
._conda_build_config.yaml
212 Bytes
._meta.yaml
212 Bytes
py-plumed
._build.sh
212 Bytes
._conda_build_config.yaml
212 Bytes
._meta.yaml
212 Bytes
developer-doc
._.gitignore
212 Bytes
._AddingACLTool.md
212 Bytes
._AddingAColvar.md
212 Bytes
._AddingAFunction.md
212 Bytes
._AddingAMeasure.md
212 Bytes
._AddingAMultColvar.md
212 Bytes
._AddingAnAnalysis.md
212 Bytes
._AddingRegressionTests.md
212 Bytes
._CodeFormatting.md
212 Bytes
._Doc.txt
212 Bytes
._Doxyfile
212 Bytes
._HowToContributeToPlumed.md
212 Bytes
._InstallationLayout.md
212 Bytes
._Intro.md
212 Bytes
._Makefile
212 Bytes
._PlumedDeveloperHeader.html
212 Bytes
._PlumedFooter.html
212 Bytes
._developer-logo.png
212 Bytes
._extract
212 Bytes
._go-doxygen
212 Bytes
._intro-git.md
212 Bytes
._logo.png
212 Bytes
._mdTemplate.md
212 Bytes
._octocat.png
212 Bytes
._parsing.md
212 Bytes
._pigeon.png
212 Bytes
._plmdIntro.md
212 Bytes
._usingDoxygen.md
212 Bytes
docker
._.gitignore
212 Bytes
._Dockerfile
212 Bytes
._Makefile
212 Bytes
._centos7
212 Bytes
macports
._.gitignore
212 Bytes
._Makefile
212 Bytes
._Portfile.in
212 Bytes
._PortfilePython.in
212 Bytes
._generate-portfile.sh
212 Bytes
patches
._.DS_Store
120 Bytes
._gromacs-2019.6.config
212 Bytes
._gromacs-2019.6.diff
212 Bytes
._gromacs-2020.4.config
212 Bytes
._gromacs-2020.4.diff
212 Bytes
._gromacs-4.5.7.config
212 Bytes
._gromacs-4.5.7.diff
212 Bytes
._namd-2.12.config
212 Bytes
._namd-2.12.diff
212 Bytes
._namd-2.13.config
212 Bytes
._namd-2.13.diff
212 Bytes
._namd-2.14.config
212 Bytes
._namd-2.14.diff
212 Bytes
._patch.sh
212 Bytes
._qespresso-5.0.2.config
212 Bytes
._qespresso-5.0.2.diff
212 Bytes
._qespresso-6.2.config
212 Bytes
._qespresso-6.2.diff
212 Bytes
gromacs-2019.6.diff
._src
212 Bytes
gromacs-2020.4.diff
._src
212 Bytes
qespresso-5.0.2.diff
._PW
212 Bytes
qespresso-6.2.diff
._PW
212 Bytes
python
._.gitignore
212 Bytes
._MANIFEST.in
212 Bytes
._Makefile
212 Bytes
._README.rst
212 Bytes
._cplumed.pxd
212 Bytes
._plumed.pyx
212 Bytes
._setup.py
212 Bytes
._test
212 Bytes
test
._COLVAR
212 Bytes
._COLVAR_gzipped.gz
212 Bytes
._COLVAR_write.ref
212 Bytes
._Makefile
212 Bytes
._colvar.ref
212 Bytes
._config
212 Bytes
._dataframe.0.ref
212 Bytes
._dataframe.1.ref
212 Bytes
._dataframe.2.ref
212 Bytes
._dataframe.3.ref
212 Bytes
._dataframe.4.ref
212 Bytes
._dataframe.ref
212 Bytes
._dataframe_noconst.0.ref
212 Bytes
._dataframe_noconst.1.ref
212 Bytes
._dataframe_noconst.2.ref
212 Bytes
._dataframe_noconst.3.ref
212 Bytes
._dataframe_noconst.4.ref
212 Bytes
._dataframe_noconst.ref
212 Bytes
._ref.pdb
212 Bytes
._template.pdb
212 Bytes
._test_array.py
212 Bytes
._test_input_builder.py
212 Bytes
._test_pandas.py
212 Bytes
._test_run.py
212 Bytes
._traj.xyz
212 Bytes
regtest
._.DS_Store
120 Bytes
._.gitignore
212 Bytes
._Makefile
212 Bytes
._README
212 Bytes
._adjmat
212 Bytes
._analysis
212 Bytes
._annfunc
212 Bytes
._basic
212 Bytes
._crystallization
212 Bytes
._dimred
212 Bytes
._drr
212 Bytes
._eds
212 Bytes
._fisst
212 Bytes
._funnel
212 Bytes
._isdb
212 Bytes
._logmfd
212 Bytes
._manyrestraints
212 Bytes
._mapping
212 Bytes
._maze
212 Bytes
._multicolvar
212 Bytes
._opes
212 Bytes
._pamm
212 Bytes
._piv
212 Bytes
._python
212 Bytes
._scripts
212 Bytes
._secondarystructure
212 Bytes
._trajectories
212 Bytes
._ves
212 Bytes
mapping
._Makefile
212 Bytes
._rt-adapt
212 Bytes
._rt-pathtools-2
212 Bytes
._rt-pathtools-3
212 Bytes
._rt-pathtools-4
212 Bytes
._rt-pca-multi
212 Bytes
._rt-tpath
212 Bytes
._rt39
212 Bytes
._rt39-mpi
212 Bytes
._rt40-mpi
212 Bytes
secondarystructure
._Makefile
212 Bytes
._rt32
212 Bytes
._rt33
212 Bytes
._rt33-mpi
212 Bytes
scripts
._config.sh
212 Bytes
._mklib.sh
212 Bytes
._newcv.sh
212 Bytes
._partial_tempering.sh
212 Bytes
._patch.sh
212 Bytes
._selector.sh
212 Bytes
._vim2html.sh
212 Bytes
src
._.DS_Store
120 Bytes
._.gitignore
212 Bytes
._Makefile
212 Bytes
._README
212 Bytes
._adjmat
212 Bytes
._analysis
212 Bytes
._annfunc
212 Bytes
._asmjit
212 Bytes
._astyle.sh
212 Bytes
._bias
212 Bytes
._blas
212 Bytes
._cltools
212 Bytes
._colvar
212 Bytes
._config
212 Bytes
._core
212 Bytes
._crystallization
212 Bytes
._dimred
212 Bytes
._drr
212 Bytes
._eds
212 Bytes
._fisst
212 Bytes
._function
212 Bytes
._funnel
212 Bytes
._generic
212 Bytes
._gridtools
212 Bytes
._header.sh
212 Bytes
._include
212 Bytes
._isdb
212 Bytes
._lapack
212 Bytes
._lepton
212 Bytes
._lib
212 Bytes
._logmfd
212 Bytes
._main
212 Bytes
._maketools
212 Bytes
._manyrestraints
212 Bytes
._mapping
212 Bytes
._maze
212 Bytes
._molfile
212 Bytes
._multicolvar
212 Bytes
._opes
212 Bytes
._pamm
212 Bytes
._piv
212 Bytes
._reference
212 Bytes
._secondarystructure
212 Bytes
._setup
212 Bytes
._tools
212 Bytes
._vatom
212 Bytes
._ves
212 Bytes
._vesselbase
212 Bytes
._wrapper
212 Bytes
test
._.DS_Store
120 Bytes
._Makefile
212 Bytes
._gromacs
212 Bytes
._link
212 Bytes
._namd
212 Bytes
._qespresso
212 Bytes
gromacs
._.gitignore
212 Bytes
._conf.gro
212 Bytes
._grompp.mdp
212 Bytes
._plumed.dat
212 Bytes
._test1
212 Bytes
._test2
212 Bytes
._topol.top
212 Bytes
link
._.gitignore
212 Bytes
._Makefile
212 Bytes
._main.cpp
212 Bytes
._mainc.c
212 Bytes
._mainf.f90
212 Bytes
._plumed.dat
212 Bytes
namd
._.gitignore
212 Bytes
._dia2.pdb
212 Bytes
._dia2.psf
212 Bytes
._namd_input
212 Bytes
._par_all27_prot_lipid.prm
212 Bytes
._plumed.dat
212 Bytes
qespresso
._PW
212 Bytes
user-doc
._.DS_Store
120 Bytes
._.gitignore
212 Bytes
._ANNMOD.md
212 Bytes
._AdditionalModules.md
212 Bytes
._Analysis.md
212 Bytes
._Bias.md
212 Bytes
._ChangeLog.md
212 Bytes
._CollectiveVariables.md
212 Bytes
._CommandLineTools.md
212 Bytes
._Doxyfile
212 Bytes
._EABFMOD.md
212 Bytes
._EDSMOD.md
212 Bytes
._FISSTMOD.md
212 Bytes
._FUNNELMOD.md
212 Bytes
._Files.md
212 Bytes
._Functions.md
212 Bytes
._GettingStarted.md
212 Bytes
._Glossary.md
212 Bytes
._Group.md
212 Bytes
._ISDB.md
212 Bytes
._Installation.md
212 Bytes
._Introduction.md
212 Bytes
._LOGMFDMOD.md
212 Bytes
._MAZE.md
212 Bytes
._Makefile
212 Bytes
._Miscelaneous.md
212 Bytes
._Modules.md
212 Bytes
._OPES.md
212 Bytes
._PIVMOD.md
212 Bytes
._Performances.md
212 Bytes
._PlumedFooter.html
212 Bytes
._PlumedLayout.xml
212 Bytes
._PlumedUserHeader.html
212 Bytes
._Regex.md
212 Bytes
._Tutorials.md
212 Bytes
._VES.md
212 Bytes
._basic.list
212 Bytes
._bibliography.bib
212 Bytes
._extract
212 Bytes
._figs
212 Bytes
._go-doxygen
212 Bytes
._go-spelling
212 Bytes
._logo.png
212 Bytes
._octocat.png
212 Bytes
._pigeon.png
212 Bytes
._plumed-syntax.awk
212 Bytes
._plumed.css
212 Bytes
._report_errors
212 Bytes
._spelling_words.dict
212 Bytes
._test_examples
212 Bytes
._tutorials
212 Bytes
._user-logo.png
212 Bytes
figs
._belfast-2-ab-sz-nowhere.png
212 Bytes
._belfast-2-ab-sz.png
212 Bytes
._belfast-2-ab.png
212 Bytes
._belfast-2-ala.png
212 Bytes
._belfast-2-bad-matrix.png
212 Bytes
._belfast-2-cdk.png
212 Bytes
._belfast-2-good-bad-path.png
212 Bytes
._belfast-2-good-matrix.png
212 Bytes
._belfast-2-good-vs-bad.png
212 Bytes
._belfast-2-metadpath-correction.png
212 Bytes
._belfast-2-metadpath-free.png
212 Bytes
._belfast-2-metadpath.png
212 Bytes
._belfast-2-rama.png
212 Bytes
._belfast-2-transition.png
212 Bytes
._belfast-4-meta.png
212 Bytes
._belfast-5-doublesteer.png
212 Bytes
._belfast-5-jarz.png
212 Bytes
._belfast-5-work-1.png
212 Bytes
._belfast-6-difft.png
212 Bytes
._belfast-6-hidden.png
212 Bytes
._belfast-6-metad.png
212 Bytes
._belfast-6-phialone.png
212 Bytes
._belfast-6-phifes.png
212 Bytes
._belfast-6-phifest.png
212 Bytes
._belfast-6-wtb15.png
212 Bytes
._belfast-6-wtb6.png
212 Bytes
._belfast-6-wtdifft.png
212 Bytes
._belfast-7-pt.png
212 Bytes
._belfast-7-pt2demux.png
212 Bytes
._belfast-7-pt2fes.png
212 Bytes
._belfast-7-pt2temp.png
212 Bytes
._belfast-7-ptalaw.png
212 Bytes
._belfast-7-ptdemux.png
212 Bytes
._belfast-7-ptfes.png
212 Bytes
._belfast-7-ptmetadh.png
212 Bytes
._belfast-7-ptmetadhidd.png
212 Bytes
._belfast-7-ptwtediff.png
212 Bytes
._belfast-7-ptwteene.png
212 Bytes
._belfast-8-convergence.png
212 Bytes
._belfast-8-mg1.png
212 Bytes
._cambridge-2-cvs.png
212 Bytes
._cambridge-2-deltaG.png
212 Bytes
._cambridge-2-fes.png
212 Bytes
._cambridge-2-fes1d.png
212 Bytes
._cambridge-chignolin.png
212 Bytes
._lugano-3-hysteresis.png
212 Bytes
._lugano-4-lj7-errors.png
212 Bytes
._lugano-5-gismo.png
212 Bytes
._lugano-6b-fes.png
212 Bytes
._lugano-6b-ffcn.png
212 Bytes
._lugano-6b-ffcnUB.png
212 Bytes
._lugano-6b-ffdc.png
212 Bytes
._lugano-6b-ffdnUB.png
212 Bytes
._lugano-6b-ffdp.png
212 Bytes
._lugano-6d-gb.png
212 Bytes
._lyon-histograms-highT.png
212 Bytes
._lyon-histograms-lowT.png
212 Bytes
._lyon-lj7-minima.png
212 Bytes
._lyon-time-series.png
212 Bytes
._marvel-2-pca-coordinates.png
212 Bytes
._marvel-2-trans-state.png
212 Bytes
._master-ISDD-1-dih-fig.png
212 Bytes
._master-ISDD-2-fescomp-fig.png
212 Bytes
._munster-ala-traj-metad.png
212 Bytes
._munster-ala-traj.png
212 Bytes
._munster-final-free-energy.png
212 Bytes
._munster-metad-phi.png
212 Bytes
._munster-metad-phifes-difft.png
212 Bytes
._munster-metad-phifes.png
212 Bytes
._munster-metad-phifest.png
212 Bytes
._munster-metad-phihills.png
212 Bytes
._munster-metad-psi-phi.png
212 Bytes
._munster-usrem-phi-all.png
212 Bytes
._munster-usrem-phi-fes.png
212 Bytes
._munster-usrem-psi-demux.png
212 Bytes
._munster-usrem-psi-fes.png
212 Bytes
._trieste-2-autocorrelation.png
212 Bytes
._trieste-2-block-averages.png
212 Bytes
._trieste-2-confidence.png
212 Bytes
._trieste-2-histogram-errors.png
212 Bytes
._trieste-2-mc-autocorrelation.png
212 Bytes
._trieste-3-histo-dimer.png
212 Bytes
._trieste-3-wdimer.png
212 Bytes
._trieste-4-block-phi.png
212 Bytes
._trieste-5-colvars.png
212 Bytes
._trieste-5-demux-bad.png
212 Bytes
._trieste-5-demux-good.png
212 Bytes
._trieste-5-weights.png
212 Bytes
._trieste-6-bard1.png
212 Bytes
._trieste-6-cmycurea.png
212 Bytes
._trieste-6-gb.png
212 Bytes
._ves-lugano2017-kinetics_StoneWales.png
212 Bytes
._ves-lugano2017-kinetics_figure-1A.png
212 Bytes
._ves-lugano2017-kinetics_figure-1B.png
212 Bytes
._ves-lugano2017-kinetics_figure-2.png
212 Bytes
._ves-lugano2017-kinetics_figure-3.png
212 Bytes
._ves-lugano2017-logo.png
212 Bytes
._ves-lugano2017-metad_NaCl.png
212 Bytes
._ves-lugano2017-metad_barrier.png
212 Bytes
._ves-lugano2017-metad_biasEvolution.png
212 Bytes
._ves-lugano2017-metad_fesEvolution.png
212 Bytes
._ves-lugano2017-metad_reweightBoth.png
212 Bytes
._ves-lugano2017-metad_reweightDist.png
212 Bytes
._ves-lugano2017-ves1_biasedDistrib.png
212 Bytes
._ves-lugano2017-ves1_coeffs1.png
212 Bytes
._ves-lugano2017-ves1_fes.png
212 Bytes
._ves-lugano2017-ves1_fesEvolution1.png
212 Bytes
._ves-lugano2017-ves1_reweight.png
212 Bytes
._ves-lugano2017-ves1_targetDistrib.png
212 Bytes
._ves-lugano2017-ves2_2D-coeffs.png
212 Bytes
._ves-lugano2017-ves2_2D-fes.png
212 Bytes
._ves-lugano2017-ves2_targetDistrib.png
212 Bytes
._ves-lugano2017-ves2_well-tempered.png
212 Bytes
._ves_basisf-chebyshev.png
212 Bytes
._ves_basisf-legendre-scaled.png
212 Bytes
._ves_basisf-legendre.png
212 Bytes
tutorials
._a-master-ISDD-1.txt
212 Bytes
._a-master-ISDD-2.txt
212 Bytes
._aa-lugano-1.txt
212 Bytes
._aa-lugano-2.txt
212 Bytes
._aa-lugano-3.txt
212 Bytes
._aa-lugano-4.txt
212 Bytes
._aa-lugano-5.txt
212 Bytes
._aa-lugano-6a.txt
212 Bytes
._aa-lugano-6b.txt
212 Bytes
._aa-lugano-6c.txt
212 Bytes
._aa-lugano-6d.txt
212 Bytes
._hrex.txt
212 Bytes
._intro-multi-video.site
212 Bytes
._intro-video.site
212 Bytes
._julich-devel
212 Bytes
._julich-devel.txt
212 Bytes
._lugano-2
212 Bytes
._lugano-3
212 Bytes
._lugano-4
212 Bytes
._lugano-5
212 Bytes
._lugano-6a
212 Bytes
._lugano-6c
212 Bytes
._lugano-6d
212 Bytes
._lyon
212 Bytes
._lyon.txt
212 Bytes
._marvel-1
212 Bytes
._marvel-1.txt
212 Bytes
._marvel-2
212 Bytes
._marvel-2.txt
212 Bytes
._master-ISDD-2
212 Bytes
._munster.txt
212 Bytes
._old_tutorials
212 Bytes
._others
212 Bytes
._performance-optimization
212 Bytes
._performance-optimization.txt
212 Bytes
._wiki.site
212 Bytes
vim
._.gitignore
212 Bytes
._Makefile
212 Bytes
._scripts.vim
212 Bytes
._vimsyntax.sh
212 Bytes
plumed2_development
.DS_Store
8.2 kB
.astyle.options
71 Bytes
.codecov.yml
94 Bytes
.github
CONTRIBUTING.md
2.1 kB
PULL_REQUEST_TEMPLATE.md
2.0 kB
workflows
.gitignore
179 Bytes
.lgtm.yml
245 Bytes
.travis
check.log
101 Bytes
install.arrayfire
254 Bytes
install.boost
606 Bytes
install.ccache
479 Bytes
install.cppcheck
777 Bytes
install.doxygen
415 Bytes
install.gawk
335 Bytes
install.lcov
329 Bytes
install.xdrfile
630 Bytes
push
6.1 kB
.travis.yml
10.6 kB
CHANGES
v2.0.md
7.9 kB
v2.1.md
15.0 kB
v2.2.md
13.1 kB
v2.3.md
17.3 kB
v2.4.md
15.2 kB
v2.5.md
15.3 kB
v2.6.md
3.7 kB
v2.7.md
3.0 kB
COPYING.LESSER
7.6 kB
Makefile
2.5 kB
Makefile.conf.in
1.2 kB
PEOPLE
527 Bytes
README.md
8.1 kB
VERSION
322 Bytes
astyle
.gitignore
7 Bytes
CMakeLists.txt
6.0 kB
LICENSE.md
1.1 kB
Makefile
127 Bytes
README.md
347 Bytes
build
doc
file
src
conda
.DS_Store
6.1 kB
Makefile
196 Bytes
plumed
build.sh
1.4 kB
conda_build_config.yaml
105 Bytes
meta.yaml
1.8 kB
py-plumed
build.sh
139 Bytes
conda_build_config.yaml
103 Bytes
meta.yaml
955 Bytes
run-conda-build.sh
359 Bytes
run-conda-upload.sh
617 Bytes
configure
323.1 kB
configure.ac
43.7 kB
developer-doc
.gitignore
92 Bytes
AddingACLTool.md
5.0 kB
AddingAColvar.md
7.2 kB
AddingAFunction.md
7.3 kB
AddingAMeasure.md
9.3 kB
AddingAMultColvar.md
16.2 kB
AddingAnAnalysis.md
18.6 kB
AddingRegressionTests.md
13.1 kB
CodeFormatting.md
2.7 kB
Doc.txt
10.8 kB
Doxyfile
107.5 kB
HowToContributeToPlumed.md
14.7 kB
InstallationLayout.md
10.8 kB
Intro.md
5.1 kB
Makefile
990 Bytes
PlumedDeveloperHeader.html
2.4 kB
PlumedFooter.html
1.0 kB
developer-logo.png
80.0 kB
extract
3.2 kB
go-doxygen
265 Bytes
intro-git.md
2.7 kB
logo.png
21.1 kB
mdTemplate.md
26.3 kB
octocat.png
2.1 MB
parsing.md
1.7 kB
pigeon.png
172.0 kB
plmdIntro.md
27.6 kB
usingDoxygen.md
35.2 kB
docker
.gitignore
13 Bytes
Dockerfile
1.0 kB
Makefile
260 Bytes
centos7
1.3 kB
macports
.gitignore
9 Bytes
Makefile
52 Bytes
Portfile.in
5.0 kB
PortfilePython.in
2.0 kB
generate-portfile.sh
2.7 kB
patches
.DS_Store
6.1 kB
gromacs-2019.6.config
990 Bytes
gromacs-2019.6.diff
src
gromacs-2020.4.config
990 Bytes
gromacs-2020.4.diff
src
gromacs-4.5.7.config
1.3 kB
gromacs-4.5.7.diff
14.3 kB
namd-2.12.config
799 Bytes
namd-2.12.diff
7.9 kB
namd-2.13.config
799 Bytes
namd-2.13.diff
8.0 kB
namd-2.14.config
799 Bytes
namd-2.14.diff
8.0 kB
patch.sh
14.3 kB
qespresso-5.0.2.config
643 Bytes
qespresso-5.0.2.diff
PW
qespresso-6.2.config
729 Bytes
qespresso-6.2.diff
PW
python
.gitignore
168 Bytes
MANIFEST.in
80 Bytes
Makefile
1.2 kB
README.rst
1.2 kB
cplumed.pxd
1.6 kB
plumed.pyx
39.2 kB
setup.py
5.4 kB
test
COLVAR
1.2 kB
COLVAR_gzipped.gz
435 Bytes
COLVAR_write.ref
872 Bytes
Makefile
32 Bytes
colvar.ref
4.3 kB
config
140 Bytes
dataframe.0.ref
320 Bytes
dataframe.1.ref
320 Bytes
dataframe.2.ref
325 Bytes
dataframe.3.ref
325 Bytes
dataframe.4.ref
325 Bytes
dataframe.ref
1.4 kB
dataframe_noconst.0.ref
270 Bytes
dataframe_noconst.1.ref
270 Bytes
dataframe_noconst.2.ref
275 Bytes
dataframe_noconst.3.ref
275 Bytes
dataframe_noconst.4.ref
275 Bytes
dataframe_noconst.ref
1.2 kB
ref.pdb
520.0 kB
template.pdb
20.3 kB
test_array.py
1.2 kB
test_input_builder.py
5.8 kB
test_pandas.py
2.6 kB
test_run.py
6.3 kB
traj.xyz
138.5 kB
regtest
.DS_Store
6.1 kB
.gitignore
416 Bytes
Makefile
563 Bytes
README
1.6 kB
adjmat
analysis
annfunc
basic
crystallization
dimred
drr
eds
fisst
funnel
isdb
logmfd
manyrestraints
mapping
Makefile
32 Bytes
rt-adapt
rt-pathtools-2
rt-pathtools-3
rt-pathtools-4
rt-pca-multi
rt-tpath
rt39
rt39-mpi
rt40
rt40-mpi
maze
multicolvar
opes
pamm
piv
python
scripts
secondarystructure
Makefile
32 Bytes
rt32
rt33
rt33-mpi
trajectories
ves
release.sh
5.4 kB
scripts
config.sh
3.1 kB
mklib.sh
718 Bytes
newcv.sh
486 Bytes
partial_tempering.sh
10.3 kB
patch.sh
54 Bytes
selector.sh
6.0 kB
vim2html.sh
4.2 kB
sourceme.sh.in
319 Bytes
src
.DS_Store
14.3 kB
.gitignore
581 Bytes
Makefile
1.2 kB
README
1.0 kB
adjmat
analysis
annfunc
asmjit
astyle.sh
637 Bytes
bias
blas
cltools
colvar
config
core
crystallization
dimred
drr
eds
fisst
function
funnel
generic
gridtools
header.sh
3.2 kB
include
isdb
lapack
lepton
lib
logmfd
main
maketools
manyrestraints
mapping
maze
molfile
multicolvar
opes
pamm
piv
reference
secondarystructure
setup
tools
vatom
ves
vesselbase
wrapper
stamp-h.in
0 Bytes
test
.DS_Store
6.1 kB
Makefile
233 Bytes
gromacs
.gitignore
123 Bytes
conf.gro
44.8 kB
grompp.mdp
1.3 kB
plumed.dat
107 Bytes
test1
test2
topol.top
6.8 kB
link
.gitignore
108 Bytes
Makefile
1.3 kB
main.cpp
818 Bytes
mainc.c
498 Bytes
mainf.f90
437 Bytes
plumed.dat
72 Bytes
namd
.gitignore
84 Bytes
dia2.pdb
1.8 kB
dia2.psf
4.9 kB
namd_input
612 Bytes
par_all27_prot_lipid.prm
182.9 kB
plumed.dat
51 Bytes
qespresso
PW
user-doc
.DS_Store
6.1 kB
.gitignore
147 Bytes
ANNMOD.md
1.3 kB
AdditionalModules.md
307 Bytes
Analysis.md
16.5 kB
Bias.md
319 Bytes
ChangeLog.md
1.5 kB
CollectiveVariables.md
13.7 kB
CommandLineTools.md
419 Bytes
Doxyfile
102.0 kB
EABFMOD.md
1.2 kB
EDSMOD.md
1.7 kB
FISSTMOD.md
1.0 kB
FUNNELMOD.md
2.6 kB
Files.md
3.3 kB
Functions.md
1.9 kB
GettingStarted.md
4.4 kB
Glossary.md
648 Bytes
Group.md
5.7 kB
ISDB.md
2.3 kB
Installation.md
41.2 kB
Introduction.md
3.5 kB
LOGMFDMOD.md
1.3 kB
MAZE.md
1.3 kB
Makefile
604 Bytes
Miscelaneous.md
27.1 kB
Modules.md
2.7 kB
OPES.md
755 Bytes
PIVMOD.md
782 Bytes
Performances.md
12.5 kB
PlumedFooter.html
1.0 kB
PlumedLayout.xml
7.8 kB
PlumedUserHeader.html
2.4 kB
Regex.md
3.3 kB
Tutorials.md
423 Bytes
VES.md
3.5 kB
basic.list
291 Bytes
bibliography.bib
101.7 kB
extract
15.6 kB
figs
belfast-2-ab-sz-nowhere.png
328.3 kB
belfast-2-ab-sz.png
68.6 kB
belfast-2-ab.png
60.3 kB
belfast-2-ala.png
53.2 kB
belfast-2-bad-matrix.png
75.6 kB
belfast-2-cdk.png
367.3 kB
belfast-2-good-bad-path.png
237.5 kB
belfast-2-good-matrix.png
96.5 kB
belfast-2-good-vs-bad.png
68.4 kB
belfast-2-metadpath-correction.png
449.7 kB
belfast-2-metadpath-free.png
384.7 kB
belfast-2-metadpath.png
183.3 kB
belfast-2-rama.png
257.8 kB
belfast-2-transition.png
106.8 kB
belfast-4-meta.png
20.0 kB
belfast-5-doublesteer.png
155.9 kB
belfast-5-jarz.png
191.1 kB
belfast-5-work-1.png
142.5 kB
belfast-6-difft.png
6.5 kB
belfast-6-hidden.png
31.4 kB
belfast-6-metad.png
28.2 kB
belfast-6-phialone.png
112.8 kB
belfast-6-phifes.png
5.7 kB
belfast-6-phifest.png
8.3 kB
belfast-6-wtb15.png
171.0 kB
belfast-6-wtb6.png
201.9 kB
belfast-6-wtdifft.png
35.1 kB
belfast-7-pt.png
8.1 kB
belfast-7-pt2demux.png
14.4 kB
belfast-7-pt2fes.png
5.4 kB
belfast-7-pt2temp.png
5.8 kB
belfast-7-ptalaw.png
23.1 kB
belfast-7-ptdemux.png
7.4 kB
belfast-7-ptfes.png
6.4 kB
belfast-7-ptmetadh.png
173.8 kB
belfast-7-ptmetadhidd.png
99.7 kB
belfast-7-ptwtediff.png
5.2 kB
belfast-7-ptwteene.png
31.9 kB
belfast-8-convergence.png
111.2 kB
belfast-8-mg1.png
125.1 kB
cambridge-2-cvs.png
145.1 kB
cambridge-2-deltaG.png
34.0 kB
cambridge-2-fes.png
203.6 kB
cambridge-2-fes1d.png
27.3 kB
cambridge-chignolin.png
106.1 kB
lugano-3-hysteresis.png
20.5 kB
lugano-4-lj7-errors.png
13.2 kB
lugano-5-gismo.png
136.7 kB
lugano-6b-fes.png
14.2 kB
lugano-6b-ffcn.png
5.1 kB
lugano-6b-ffcnUB.png
6.4 kB
lugano-6b-ffdc.png
6.5 kB
lugano-6b-ffdnUB.png
6.6 kB
lugano-6b-ffdp.png
4.7 kB
lugano-6d-gb.png
74.2 kB
lyon-histograms-highT.png
13.3 kB
lyon-histograms-lowT.png
10.9 kB
lyon-lj7-minima.png
59.3 kB
lyon-time-series.png
24.4 kB
marvel-2-pca-coordinates.png
263.2 kB
marvel-2-trans-state.png
261.8 kB
master-ISDD-1-dih-fig.png
9.4 kB
master-ISDD-2-fescomp-fig.png
7.0 kB
munster-ala-traj-metad.png
19.9 kB
munster-ala-traj.png
7.1 kB
munster-final-free-energy.png
18.9 kB
munster-metad-phi.png
26.0 kB
munster-metad-phifes-difft.png
5.1 kB
munster-metad-phifes.png
16.1 kB
munster-metad-phifest.png
29.5 kB
munster-metad-phihills.png
17.3 kB
munster-metad-psi-phi.png
33.5 kB
munster-usrem-phi-all.png
29.7 kB
munster-usrem-phi-fes.png
7.1 kB
munster-usrem-psi-demux.png
13.7 kB
munster-usrem-psi-fes.png
6.9 kB
trieste-2-autocorrelation.png
24.0 kB
trieste-2-block-averages.png
26.0 kB
trieste-2-confidence.png
16.1 kB
trieste-2-histogram-errors.png
30.4 kB
trieste-2-mc-autocorrelation.png
19.3 kB
trieste-3-histo-dimer.png
4.3 kB
trieste-3-wdimer.png
10.9 kB
trieste-4-block-phi.png
6.0 kB
trieste-5-colvars.png
24.2 kB
trieste-5-demux-bad.png
14.3 kB
trieste-5-demux-good.png
32.9 kB
trieste-5-weights.png
11.7 kB
trieste-6-bard1.png
42.8 kB
trieste-6-cmycurea.png
27.7 kB
trieste-6-gb.png
74.2 kB
ves-lugano2017-kinetics_StoneWales.png
131.8 kB
ves-lugano2017-kinetics_figure-1A.png
5.2 kB
ves-lugano2017-kinetics_figure-1B.png
6.3 kB
ves-lugano2017-kinetics_figure-2.png
6.3 kB
ves-lugano2017-kinetics_figure-3.png
24.0 kB
ves-lugano2017-logo.png
774.2 kB
ves-lugano2017-metad_NaCl.png
133.4 kB
ves-lugano2017-metad_barrier.png
38.0 kB
ves-lugano2017-metad_biasEvolution.png
86.1 kB
ves-lugano2017-metad_fesEvolution.png
115.5 kB
ves-lugano2017-metad_reweightBoth.png
126.8 kB
ves-lugano2017-metad_reweightDist.png
50.1 kB
ves-lugano2017-ves1_biasedDistrib.png
35.4 kB
ves-lugano2017-ves1_coeffs1.png
203.4 kB
ves-lugano2017-ves1_fes.png
37.3 kB
ves-lugano2017-ves1_fesEvolution1.png
71.5 kB
ves-lugano2017-ves1_reweight.png
42.9 kB
ves-lugano2017-ves1_targetDistrib.png
23.9 kB
ves-lugano2017-ves2_2D-coeffs.png
182.8 kB
ves-lugano2017-ves2_2D-fes.png
173.7 kB
ves-lugano2017-ves2_targetDistrib.png
53.5 kB
ves-lugano2017-ves2_well-tempered.png
52.2 kB
ves_basisf-chebyshev.png
126.3 kB
ves_basisf-legendre-scaled.png
101.6 kB
ves_basisf-legendre.png
97.5 kB
go-doxygen
4.3 kB
go-spelling
5.0 kB
logo.png
21.1 kB
octocat.png
46.2 kB
pigeon.png
743.2 kB
plumed-syntax.awk
1.9 kB
plumed.css
1.1 kB
report_errors
4.2 kB
spelling_words.dict
8.6 kB
test_examples
7.1 kB
tutorials
a-master-ISDD-1.txt
17.8 kB
a-master-ISDD-2.txt
24.5 kB
aa-lugano-1.txt
21.0 kB
aa-lugano-2.txt
19.3 kB
aa-lugano-3.txt
20.5 kB
aa-lugano-4.txt
30.0 kB
aa-lugano-5.txt
25.1 kB
aa-lugano-6a.txt
10.7 kB
aa-lugano-6b.txt
7.0 kB
aa-lugano-6c.txt
3.2 kB
aa-lugano-6d.txt
4.5 kB
hrex.txt
7.6 kB
intro-multi-video.site
130 Bytes
intro-video.site
131 Bytes
julich-devel
julich-devel.txt
13.5 kB
lugano-2
lugano-3
lugano-4
lugano-5
lugano-6a
lugano-6c
lugano-6d
lyon
lyon.txt
22.5 kB
marvel-1
marvel-1.txt
37.0 kB
marvel-2
marvel-2.txt
34.3 kB
master-ISDD-2
munster.txt
25.5 kB
old_tutorials
others
performance-optimization
performance-optimization.txt
16.7 kB
wiki.site
98 Bytes
user-logo.png
74.7 kB
vim
.gitignore
15 Bytes
Makefile
482 Bytes
scripts.vim
177 Bytes
vimsyntax.sh
15.0 kB