Published July 14, 2026 | Version v2
Dataset Open

Data-efficient and fast machine learning molecular dynamics through integrated active learning and knowledge distillation

  • 1. ROR icon École Polytechnique Fédérale de Lausanne

* Contact person

Description

We develop data-efficient machine learning interatomic potentials (MLIPs) for fast molecular dynamics simulations combining DeePMD and MACE models within an active learning and knowledge distillation framework. Using liquid water as a case study, we first independently train DeePMD and MACE models from scratch 
through active learning. We find that MACE requires around 3 times less training data than DeePMD, but its inference speed is 10 times lower. We also show that starting from a pretrained foundation model based on the MACE architecture further reduces the training data by a factor of 7, resulting in a fine-tuned foundation model with a 25 times data reduction compared to DeePMD. To overcome the limitation associated with the lower inference speed of MACE potentials, we next 
develop a knowledge distillation scheme to train a DeePMD potential from the fine-tuned foundation model through an inexpensive active learning workflow. The distilled model is generated with ~10 times less computer time than the DeePMD model trained from scratch, while showing the same fast inference speed.
Comparison with ab initio calculations shows that all the models reach the same level of accuracy in reproducing structural, vibrational, and diffusive properties of liquid water. Our approach enables practical, data-efficient training of customized MLIPs with high speed and accuracy. 

Files

File preview

All files

Files (1.4 GiB)

Name Size
md5:a27b1bb8092371cb611babd91d8e78b3
195.1 MiB Download
md5:fc191c605a2986434daf04631198fe9d
22.2 MiB Download
md5:1953093f71d7eabc6897d0cfed7104d9
7.3 MiB Download
md5:65bdf979957f958065d3da66dbf7bde7
110.5 MiB Download
md5:ae1fd7d5721dc9fccea3c36488bb2cc2
394.3 MiB Download
md5:e2a5f756a7c28350553c44e623e011c6
127.8 MiB Download
md5:c282e93906c4a05c56a577e2bf969ae0
36.8 KiB Download
md5:66d92f371c8375b49d3ef6cc6c4021b7
56.0 MiB Download
md5:bcada957d041aa46cda1fbab5de0905c
133.9 MiB Download
md5:179a771e8b4b69f87d14c872fe2e82bd
11.3 KiB Download
md5:61b3461106848ad80df3a7e5e26be211
284.8 MiB Download
md5:38bba2db881197ae1945ee65222ade31
2.0 KiB Preview Download
md5:7e895cc2736d25e24c00ebbd144cb0e5
28.5 MiB Download
md5:41b2827c3fea3a18207a0ba094eeb21e
39.3 MiB Download
md5:d7dfac1224b8320ff4e432e5379ddb0f
82.2 MiB Download

References

Preprint
Lian, X.; Pasquarello, A. Data-Efficient and Fast Machine Learning Molecular Dynamics through Integrated Active Learning and Knowledge Distillation. ChemRxiv 2026 (0511), doi: 10.26434/chemrxiv.15002964/v1