Publication date: Mar 16, 2021
Knowledge of the structure of amorphous solids can direct, for example, the optimization of pharmaceutical formulations, but atomic-level structure determination in amorphous molecular solids has so far not been possible. Solid-state NMR is among the most popular methods to characterize amorphous materials, and Molecular Dynamics (MD) simulations can help describe the structure of disordered materials. However, directly relating MD to NMR experiments in molecular solids has been out of reach until now because of the large size of these simulations. Here, using a machine learning model of chemical shifts, we determine the atomic-level structure of the hydrated amorphous drug AZD5718 by combining dynamic nuclear polarization-enhanced solid-state NMR experiments with predicted chemical shifts for MD simulations of large systems. From these amorphous structures we then identify H-bonding motifs and relate them to local intermolecular complex formation energies.
No Explore or Discover sections associated with this archive record.
File name | Size | Description |
---|---|---|
README.md
MD5md5:6e2e913b9198e679bc7842bcfd13c230
|
10.2 KiB | Detailed description of the files in the dataset |
Scripts.zip
MD5md5:460f3702015e81f2d2bde0f88290d369
|
1.3 MiB | Python notebooks used for data analysis |
Figures.zip
MD5md5:077feccf2c4063778983f94768beae7a
|
350.8 KiB | Figures generated by the Python scripts |
NMR_Experiments.zip
MD5md5:51cf1a14b077222915b89908397d9041
|
444.9 MiB | Raw NMR data |
CIFs.zip
MD5md5:057ef7a36ff055313036d94b8a281e34
|
46.8 KiB | CIF files of candidate crystal structures, XRD structure, potential tautomers, and perturbed crystal structure. |
HMBI.zip
MD5md5:f68f06304dd00de678cdd4ddf434653b
|
1.7 MiB | Chemical shift computation of the candidate crystal structures |
MD_Snapshots.zip
MD5md5:f90aa5f0e1341a01022fc0e9c512dcad
|
2.7 GiB | Molecular Dynamics trajectories of amorphous AZD5718 with different water contents |
ML_Shifts.zip
MD5md5:2c18832fa57724b5b9a25dd34ad52632
|
2.3 GiB | Predicted shieldings for all snapshots of the MD trajectories |
DFTB_D3H5.zip
MD5md5:44b01089f5d0f7bb01a40910ce800616
|
1.3 MiB | Formation energies of molecules in the MD trajectories |
2021.41 (version v1) [This version] | Mar 16, 2021 | DOI10.24435/materialscloud:gg-mx |